Loop J4_4V65

3D structure

PDB id: 4V65 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the E. coli ribosome in the Pre-accommodation state
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å

Loop

Sequence: GGCGUAAAGCGCACGCAG*UCAGGUGCGAAAGC*GCCGUAAACGAUGUCG*CGACCGCC
Length: 56 nucleotides
Bulged bases: 4V65|1|A1|C|576, 4V65|1|A1|C|810, 4V65|1|A1|U|813, 4V65|1|A1|A|815, 4V65|1|A1|C|880
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V65|1|A1|G|567
4V65|1|A1|G|568
4V65|1|A1|C|569
4V65|1|A1|G|570
4V65|1|A1|U|571
4V65|1|A1|A|572
4V65|1|A1|A|573
4V65|1|A1|A|574
4V65|1|A1|G|575
4V65|1|A1|C|576
4V65|1|A1|G|577
4V65|1|A1|C|578
4V65|1|A1|A|579
4V65|1|A1|C|580
4V65|1|A1|G|581
4V65|1|A1|C|582
4V65|1|A1|A|583
4V65|1|A1|G|584
*
4V65|1|A1|U|757
4V65|1|A1|C|758
4V65|1|A1|A|759
4V65|1|A1|G|760
4V65|1|A1|G|761
4V65|1|A1|U|762
4V65|1|A1|G|763
4V65|1|A1|C|764
4V65|1|A1|G|765
4V65|1|A1|A|766
4V65|1|A1|A|767
4V65|1|A1|A|768
4V65|1|A1|G|769
4V65|1|A1|C|770
*
4V65|1|A1|G|809
4V65|1|A1|C|810
4V65|1|A1|C|811
4V65|1|A1|G|812
4V65|1|A1|U|813
4V65|1|A1|A|814
4V65|1|A1|A|815
4V65|1|A1|A|816
4V65|1|A1|C|817
4V65|1|A1|G|818
4V65|1|A1|A|819
4V65|1|A1|U|820
4V65|1|A1|G|821
4V65|1|A1|U|822
4V65|1|A1|C|823
4V65|1|A1|G|824
*
4V65|1|A1|C|876
4V65|1|A1|G|877
4V65|1|A1|A|878
4V65|1|A1|C|879
4V65|1|A1|C|880
4V65|1|A1|G|881
4V65|1|A1|C|882
4V65|1|A1|C|883

Current chains

Chain A1: 16S rRNA

Nearby chains

Chain AH: 30S ribosomal protein S15
Chain AJ: 30S ribosomal protein S17
Chain AS: 30S ribosomal protein S5
Chain AV: 30S ribosomal protein S8
Chain BB: Large subunit ribosomal RNA; LSU rRNA

J4_4V65_002