Loop J4_4V65

3D structure

PDB id: 4V65 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the E. coli ribosome in the Pre-accommodation state
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å

Loop

Sequence: CGGUGGAG*CUACAAUGGC*GUCGUAGUCCGGAUU*AUGAAGUCGGAAUCG
Length: 48 nucleotides
Bulged bases: 4V65|1|A1|U|1240
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V65|1|A1|C|940
4V65|1|A1|G|941
4V65|1|A1|G|942
4V65|1|A1|U|943
4V65|1|A1|G|944
4V65|1|A1|G|945
4V65|1|A1|A|946
4V65|1|A1|G|947
*
4V65|1|A1|C|1234
4V65|1|A1|U|1235
4V65|1|A1|A|1236
4V65|1|A1|C|1237
4V65|1|A1|A|1238
4V65|1|A1|A|1239
4V65|1|A1|U|1240
4V65|1|A1|G|1241
4V65|1|A1|G|1242
4V65|1|A1|C|1243
*
4V65|1|A1|G|1294
4V65|1|A1|U|1295
4V65|1|A1|C|1296
4V65|1|A1|G|1297
4V65|1|A1|U|1298
4V65|1|A1|A|1299
4V65|1|A1|G|1300
4V65|1|A1|U|1301
4V65|1|A1|C|1302
4V65|1|A1|C|1303
4V65|1|A1|G|1304
4V65|1|A1|G|1305
4V65|1|A1|A|1306
4V65|1|A1|U|1307
4V65|1|A1|U|1308
*
4V65|1|A1|A|1329
4V65|1|A1|U|1330
4V65|1|A1|G|1331
4V65|1|A1|A|1332
4V65|1|A1|A|1333
4V65|1|A1|G|1334
4V65|1|A1|U|1335
4V65|1|A1|C|1336
4V65|1|A1|G|1337
4V65|1|A1|G|1338
4V65|1|A1|A|1339
4V65|1|A1|A|1340
4V65|1|A1|U|1341
4V65|1|A1|C|1342
4V65|1|A1|G|1343

Current chains

Chain A1: 16S rRNA

Nearby chains

Chain AE: Transfer RNA; tRNA
Chain AF: 30S ribosomal protein S13
Chain AP: Transfer RNA; tRNA
Chain AU: 30S ribosomal protein S7

J4_4V65_003