J4_4V65_004

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UUAG*CGC*GAGGUCC*GA

Length

16 nucleotides

Bulged bases

4V65|1|AA|U|8, 4V65|1|AA|U|47, 4V65|1|AA|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V65_004 not in the Motif Atlas

Homologous match to J4_5HR7_002

Geometric discrepancy: 0.3562

The information below is about J4_5HR7_002

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

4V65|1|AA|U|7
4V65|1|AA|U|8
4V65|1|AA|A|9
4V65|1|AA|G|10
*
4V65|1|AA|C|25
4V65|1|AA|G|26
4V65|1|AA|C|27
*
4V65|1|AA|G|43
4V65|1|AA|A|44
4V65|1|AA|G|45
4V65|1|AA|G|46
4V65|1|AA|U|47
4V65|1|AA|C|48
4V65|1|AA|C|49
*
4V65|1|AA|G|65
4V65|1|AA|A|66

Current chains

Chain AA

A/T, P and E-site tRNAs

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain AD

30S ribosomal protein S12

Chain BB

Large subunit ribosomal RNA; LSU rRNA