J4_4V65_008

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CAAGG*CGAAG*CGAG*CGUUAAG

Length

21 nucleotides

Bulged bases

4V65|1|BB|U|653, 4V65|1|BB|A|654

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|BB|C|601
4V65|1|BB|A|602
4V65|1|BB|A|603
4V65|1|BB|G|604
4V65|1|BB|G|605
*
4V65|1|BB|C|624
4V65|1|BB|G|625
4V65|1|BB|A|626
4V65|1|BB|A|627
4V65|1|BB|G|628
*
4V65|1|BB|C|635
4V65|1|BB|G|636
4V65|1|BB|A|637
4V65|1|BB|G|638
*
4V65|1|BB|C|650
4V65|1|BB|G|651
4V65|1|BB|U|652
4V65|1|BB|U|653
4V65|1|BB|A|654
4V65|1|BB|A|655
4V65|1|BB|G|656

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B1

50S ribosomal protein L4

Chain BE

50S ribosomal protein L15

Chain BW

50S ribosomal protein L35