J4_4V65_009

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CAAGGGUUCCUGUC*GGCAGGGUGAG*CU*AAUCGUACCCCAAACCGACACAGGUGG

Length

54 nucleotides

Bulged bases

4V65|1|BB|A|1308, 4V65|1|BB|U|1313, 4V65|1|BB|G|1341, 4V65|1|BB|A|1342, 4V65|1|BB|A|1598, 4V65|1|BB|U|1599, 4V65|1|BB|C|1607, 4V65|1|BB|A|1610, 4V65|1|BB|A|1614, 4V65|1|BB|C|1615, 4V65|1|BB|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|BB|C|1306
4V65|1|BB|A|1307
4V65|1|BB|A|1308
4V65|1|BB|G|1309
4V65|1|BB|G|1310
4V65|1|BB|G|1311
4V65|1|BB|U|1312
4V65|1|BB|U|1313
4V65|1|BB|C|1314
4V65|1|BB|C|1315
4V65|1|BB|U|1316
4V65|1|BB|G|1317
4V65|1|BB|U|1318
4V65|1|BB|C|1319
*
4V65|1|BB|G|1333
4V65|1|BB|G|1334
4V65|1|BB|C|1335
4V65|1|BB|A|1336
4V65|1|BB|G|1337
4V65|1|BB|G|1338
4V65|1|BB|G|1339
4V65|1|BB|U|1340
4V65|1|BB|G|1341
4V65|1|BB|A|1342
4V65|1|BB|G|1343
*
4V65|1|BB|C|1404
4V65|1|BB|U|1405
*
4V65|1|BB|A|1597
4V65|1|BB|A|1598
4V65|1|BB|U|1599
4V65|1|BB|C|1600
4V65|1|BB|G|1601
4V65|1|BB|U|1602
4V65|1|BB|A|1603
4V65|1|BB|C|1604
4V65|1|BB|C|1605
4V65|1|BB|C|1606
4V65|1|BB|C|1607
4V65|1|BB|A|1608
4V65|1|BB|A|1609
4V65|1|BB|A|1610
4V65|1|BB|C|1611
4V65|1|BB|C|1612
4V65|1|BB|G|1613
4V65|1|BB|A|1614
4V65|1|BB|C|1615
4V65|1|BB|A|1616
4V65|1|BB|C|1617
4V65|1|BB|A|1618
4V65|1|BB|G|1619
4V65|1|BB|G|1620
4V65|1|BB|U|1621
4V65|1|BB|G|1622
4V65|1|BB|G|1623

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BL

50S ribosomal protein L22

Chain BM

50S ribosomal protein L23

Chain BQ

50S ribosomal protein L29

Chain BV

50S ribosomal protein L34