J4_4V65_011

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CUGCCCGGUGC*GUAAACGGCG*CCUAAGGUAGCG*CGAAUG

Length

39 nucleotides

Bulged bases

4V65|1|BB|C|1838, 4V65|1|BB|C|1925, 4V65|1|BB|G|1929, 4V65|1|BB|G|1930, 4V65|1|BB|U|1971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|BB|C|1833
4V65|1|BB|U|1834
4V65|1|BB|G|1835
4V65|1|BB|C|1836
4V65|1|BB|C|1837
4V65|1|BB|C|1838
4V65|1|BB|G|1839
4V65|1|BB|G|1840
4V65|1|BB|U|1841
4V65|1|BB|G|1842
4V65|1|BB|C|1843
*
4V65|1|BB|G|1897
4V65|1|BB|U|1898
4V65|1|BB|A|1899
4V65|1|BB|A|1900
4V65|1|BB|A|1901
4V65|1|BB|C|1902
4V65|1|BB|G|1903
4V65|1|BB|G|1904
4V65|1|BB|C|1905
4V65|1|BB|G|1906
*
4V65|1|BB|C|1924
4V65|1|BB|C|1925
4V65|1|BB|U|1926
4V65|1|BB|A|1927
4V65|1|BB|A|1928
4V65|1|BB|G|1929
4V65|1|BB|G|1930
4V65|1|BB|U|1931
4V65|1|BB|A|1932
4V65|1|BB|G|1933
4V65|1|BB|C|1934
4V65|1|BB|G|1935
*
4V65|1|BB|C|1967
4V65|1|BB|G|1968
4V65|1|BB|A|1969
4V65|1|BB|A|1970
4V65|1|BB|U|1971
4V65|1|BB|G|1972

Current chains

Chain BB

23S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain AP

Transfer RNA; tRNA

Chain BN

50S ribosomal protein L2