J4_4V65_012

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGAAGG*CUUGAC*GGUGC*GCAGG

Length

22 nucleotides

Bulged bases

4V65|1|BB|G|2286, 4V65|1|BB|A|2288, 4V65|1|BB|G|2382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|BB|C|2285
4V65|1|BB|G|2286
4V65|1|BB|A|2287
4V65|1|BB|A|2288
4V65|1|BB|G|2289
4V65|1|BB|G|2290
*
4V65|1|BB|C|2342
4V65|1|BB|U|2343
4V65|1|BB|U|2344
4V65|1|BB|G|2345
4V65|1|BB|A|2346
4V65|1|BB|C|2347
*
4V65|1|BB|G|2370
4V65|1|BB|G|2371
4V65|1|BB|U|2372
4V65|1|BB|G|2373
4V65|1|BB|C|2374
*
4V65|1|BB|G|2379
4V65|1|BB|C|2380
4V65|1|BB|A|2381
4V65|1|BB|G|2382
4V65|1|BB|G|2383

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BH

50S ribosomal protein L18

Chain BP

50S ribosomal protein L27

Chain BU

50S ribosomal protein L33

Chain BW

50S ribosomal protein L35