J4_4V65_013

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGGGCUG*UGGACGCA*UGCGGAAGA*UUGCC

Length

29 nucleotides

Bulged bases

4V65|1|BB|G|2770

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|BB|G|2642
4V65|1|BB|G|2643
4V65|1|BB|G|2644
4V65|1|BB|G|2645
4V65|1|BB|C|2646
4V65|1|BB|U|2647
4V65|1|BB|G|2648
*
4V65|1|BB|U|2672
4V65|1|BB|G|2673
4V65|1|BB|G|2674
4V65|1|BB|A|2675
4V65|1|BB|C|2676
4V65|1|BB|G|2677
4V65|1|BB|C|2678
4V65|1|BB|A|2679
*
4V65|1|BB|U|2728
4V65|1|BB|G|2729
4V65|1|BB|C|2730
4V65|1|BB|G|2731
4V65|1|BB|G|2732
4V65|1|BB|A|2733
4V65|1|BB|A|2734
4V65|1|BB|G|2735
4V65|1|BB|A|2736
*
4V65|1|BB|U|2768
4V65|1|BB|U|2769
4V65|1|BB|G|2770
4V65|1|BB|C|2771
4V65|1|BB|C|2772

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B6

50S ribosomal protein L13

Chain BD

50S ribosomal protein L14

Chain BY

50S ribosomal protein L3