J4_4V65_014
3D structure
- PDB id
- 4V65 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E. coli ribosome in the Pre-accommodation state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UUAG*CGC*GAGGUCC*GA
- Length
- 16 nucleotides
- Bulged bases
- 4V65|1|AP|U|8, 4V65|1|AP|U|47, 4V65|1|AP|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V65_014 not in the Motif Atlas
- Homologous match to J4_3KFU_002
- Geometric discrepancy: 0.333
- The information below is about J4_3KFU_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
4V65|1|AP|U|7
4V65|1|AP|U|8
4V65|1|AP|A|9
4V65|1|AP|G|10
*
4V65|1|AP|C|25
4V65|1|AP|G|26
4V65|1|AP|C|27
*
4V65|1|AP|G|43
4V65|1|AP|A|44
4V65|1|AP|G|45
4V65|1|AP|G|46
4V65|1|AP|U|47
4V65|1|AP|C|48
4V65|1|AP|C|49
*
4V65|1|AP|G|65
4V65|1|AP|A|66
Current chains
- Chain AP
- A/T, P and E-site tRNAs
Nearby chains
- Chain A1
- Small subunit ribosomal RNA; SSU rRNA
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BF
- 50S ribosomal protein L16
Coloring options: