Loop J4_4V66

3D structure

PDB id: 4V66 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the E. coli ribosome and the tRNAs in Post-accommodation state
Experimental method: ELECTRON MICROSCOPY
Resolution: 9 Å

Loop

Sequence: CGCCUGCCCGGUGC*GUAAACGGCG*CCUAAGGUAGCG*CGAAUGGCG
Length: 45 nucleotides
Bulged bases: 4V66|1|BB|C|1837, 4V66|1|BB|C|1925, 4V66|1|BB|G|1929, 4V66|1|BB|G|1930, 4V66|1|BB|U|1971
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V66|1|BB|C|1830
4V66|1|BB|G|1831
4V66|1|BB|C|1832
4V66|1|BB|C|1833
4V66|1|BB|U|1834
4V66|1|BB|G|1835
4V66|1|BB|C|1836
4V66|1|BB|C|1837
4V66|1|BB|C|1838
4V66|1|BB|G|1839
4V66|1|BB|G|1840
4V66|1|BB|U|1841
4V66|1|BB|G|1842
4V66|1|BB|C|1843
*
4V66|1|BB|G|1897
4V66|1|BB|U|1898
4V66|1|BB|A|1899
4V66|1|BB|A|1900
4V66|1|BB|A|1901
4V66|1|BB|C|1902
4V66|1|BB|G|1903
4V66|1|BB|G|1904
4V66|1|BB|C|1905
4V66|1|BB|G|1906
*
4V66|1|BB|C|1924
4V66|1|BB|C|1925
4V66|1|BB|U|1926
4V66|1|BB|A|1927
4V66|1|BB|A|1928
4V66|1|BB|G|1929
4V66|1|BB|G|1930
4V66|1|BB|U|1931
4V66|1|BB|A|1932
4V66|1|BB|G|1933
4V66|1|BB|C|1934
4V66|1|BB|G|1935
*
4V66|1|BB|C|1967
4V66|1|BB|G|1968
4V66|1|BB|A|1969
4V66|1|BB|A|1970
4V66|1|BB|U|1971
4V66|1|BB|G|1972
4V66|1|BB|G|1973
4V66|1|BB|C|1974
4V66|1|BB|G|1975

Current chains

Chain BB: 23S rRNA

Nearby chains

Chain A1: Small subunit ribosomal RNA; SSU rRNA
Chain AP: Transfer RNA; tRNA
Chain BN: 50S ribosomal protein L2

J4_4V66_011