J4_4V67_006

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4V67|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V67_006 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0887

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V67|1|BA|C|268
4V67|1|BA|U|269
*
4V67|1|BA|G|370
4V67|1|BA|A|371
4V67|1|BA|G|372
4V67|1|BA|U|373
4V67|1|BA|A|374
4V67|1|BA|C|375
*
4V67|1|BA|G|399
4V67|1|BA|G|400
4V67|1|BA|A|401
4V67|1|BA|A|402
4V67|1|BA|U|403
4V67|1|BA|C|404
4V67|1|BA|U|405
4V67|1|BA|G|406
*
4V67|1|BA|U|421
4V67|1|BA|A|422
4V67|1|BA|A|423
4V67|1|BA|G|424

Current chains

Chain BA

23S RRNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BI

50S ribosomal protein L9