J4_4V67_019

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGG*CGAAAG*CCCUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

4V67|1|CA|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V67_019 not in the Motif Atlas

Homologous match to J4_4LFB_003

Geometric discrepancy: 0.0628

The information below is about J4_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V67|1|CA|G|575
4V67|1|CA|G|576
4V67|1|CA|G|577
*
4V67|1|CA|C|764
4V67|1|CA|G|765
4V67|1|CA|A|766
4V67|1|CA|A|767
4V67|1|CA|A|768
4V67|1|CA|G|769
*
4V67|1|CA|C|810
4V67|1|CA|C|811
4V67|1|CA|C|812
4V67|1|CA|U|813
4V67|1|CA|A|814
4V67|1|CA|A|815
4V67|1|CA|A|816
4V67|1|CA|C|817
4V67|1|CA|G|818
4V67|1|CA|A|819
4V67|1|CA|U|820
4V67|1|CA|G|821
*
4V67|1|CA|C|879
4V67|1|CA|C|880

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CH

30S ribosomal protein S8

Chain CL

30S ribosomal protein S12

Chain CO

30S ribosomal protein S15

Chain CQ

30S ribosomal protein S17

Chain DA

Large subunit ribosomal RNA; LSU rRNA