3D structure

PDB id
4V67 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of a translation termination complex formed with release factor RF2.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUGG*CGU*AAGGUCG*CC
Length
16 nucleotides
Bulged bases
4V67|1|CY|U|8, 4V67|1|CY|U|47, 4V67|1|CY|C|48
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V67_020 not in the Motif Atlas
Homologous match to J4_4TUE_004
Geometric discrepancy: 0.155
The information below is about J4_4TUE_004
Detailed Annotation
tRNA junction
Broad Annotation
No text annotation
Motif group
J4_70449.29
Basepair signature
cWW-F-cWW-cWW-cHS-F-cWW-cWW
Number of instances in this motif group
54

Unit IDs

4V67|1|CY|G|7
4V67|1|CY|U|8
4V67|1|CY|G|9
4V67|1|CY|G|10
*
4V67|1|CY|C|25
4V67|1|CY|G|26
4V67|1|CY|U|27
*
4V67|1|CY|A|43
4V67|1|CY|A|44
4V67|1|CY|G|45
4V67|1|CY|G|46
4V67|1|CY|U|47
4V67|1|CY|C|48
4V67|1|CY|G|49
*
4V67|1|CY|C|65
4V67|1|CY|C|66

Current chains

Chain CY
P AND E-SITE TRNA(FMET)

Nearby chains

Chain CA
Small subunit ribosomal RNA; SSU rRNA
Chain CM
30S ribosomal protein S13
Chain CX
Bacterial peptide chain release factor 2 (RF-2)
Chain D0
50S ribosomal protein L27
Chain DA
Large subunit ribosomal RNA; LSU rRNA
Chain DQ
50S ribosomal protein L16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.193 s
Application loaded.