J4_4V68_006

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

UUA(2MG)*C(M2G)C*GAG(7MG)UC(5MC)*GA

Length

16 nucleotides

Bulged bases

4V68|1|AY|U|8, 4V68|1|AY|G|45, 4V68|1|AY|U|47

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V68|1|AY|U|7
4V68|1|AY|U|8
4V68|1|AY|A|9
4V68|1|AY|2MG|10
*
4V68|1|AY|C|25
4V68|1|AY|M2G|26
4V68|1|AY|C|27
*
4V68|1|AY|G|43
4V68|1|AY|A|44
4V68|1|AY|G|45
4V68|1|AY|7MG|46
4V68|1|AY|U|47
4V68|1|AY|C|48
4V68|1|AY|5MC|49
*
4V68|1|AY|G|65
4V68|1|AY|A|66

Current chains

Chain AY

AT-SITE TRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AZ

Elongation factor Tu-A

Chain BA

Large subunit ribosomal RNA; LSU rRNA