J4_4V68_008

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V68_008 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0907

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4V68|1|BA|C|297
4V68|1|BA|G|298
4V68|1|BA|A|299
4V68|1|BA|A|300
4V68|1|BA|G|301
*
4V68|1|BA|C|316
4V68|1|BA|G|317
4V68|1|BA|C|318
4V68|1|BA|C|319
*
4V68|1|BA|G|323
4V68|1|BA|A|324
4V68|1|BA|G|325
*
4V68|1|BA|C|337
4V68|1|BA|G|338
4V68|1|BA|U|339
4V68|1|BA|A|340
4V68|1|BA|G|341

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BY

50S ribosomal protein L24