J4_4V68_010

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

4V68|1|BA|G|1271, 4V68|1|BA|A|1272, 4V68|1|BA|U|1273, 4V68|1|BA|A|1274, 4V68|1|BA|C|1646, 4V68|1|BA|G|1647

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V68_010 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.0865

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4V68|1|BA|C|1270
4V68|1|BA|G|1271
4V68|1|BA|A|1272
4V68|1|BA|U|1273
4V68|1|BA|A|1274
4V68|1|BA|A|1275
4V68|1|BA|A|1276
*
4V68|1|BA|U|1294
4V68|1|BA|C|1295
*
4V68|1|BA|G|1645
4V68|1|BA|C|1646
4V68|1|BA|G|1647
4V68|1|BA|C|1648
*
4V68|1|BA|G|2009
4V68|1|BA|G|2010

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B5

50S ribosomal protein L32

Chain BR

50S ribosomal protein L17

Chain BW

50S ribosomal protein L22