J4_4V68_013

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

4V68|1|BA|A|1445

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V68_013 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.2385

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V68|1|BA|G|1444
4V68|1|BA|A|1445
4V68|1|BA|C|1445|||A
*
4V68|1|BA|G|1466
4V68|1|BA|C|1467
*
4V68|1|BA|G|1525
4V68|1|BA|G|1526
*
4V68|1|BA|C|1546
4V68|1|BA|C|1547

Current chains

Chain BA

23S rRNA

Nearby chains