J4_4V69_004

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

4V69|1|AV|U|8, 4V69|1|AV|U|47, 4V69|1|AV|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V69_004 not in the Motif Atlas

Homologous match to J4_6UFM_001

Geometric discrepancy: 0.2375

The information below is about J4_6UFM_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

4V69|1|AV|G|7
4V69|1|AV|U|8
4V69|1|AV|G|9
4V69|1|AV|G|10
*
4V69|1|AV|C|25
4V69|1|AV|G|26
4V69|1|AV|U|27
*
4V69|1|AV|A|43
4V69|1|AV|A|44
4V69|1|AV|G|45
4V69|1|AV|G|46
4V69|1|AV|U|47
4V69|1|AV|C|48
4V69|1|AV|G|49
*
4V69|1|AV|C|65
4V69|1|AV|C|66

Current chains

Chain AV

E-site tRNA Phe

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AM

30S ribosomal protein S13

Chain BB

Large subunit ribosomal RNA; LSU rRNA