J4_4V69_005

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

AUAG*CAGG*CCGUGUCC*GU

Length

18 nucleotides

Bulged bases

4V69|1|AW|U|8, 4V69|1|AW|U|47, 4V69|1|AW|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V69_005 not in the Motif Atlas

Homologous match to J4_7E8O_001

Geometric discrepancy: 0.4816

The information below is about J4_7E8O_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V69|1|AW|A|7
4V69|1|AW|U|8
4V69|1|AW|A|9
4V69|1|AW|G|10
*
4V69|1|AW|C|25
4V69|1|AW|A|26
4V69|1|AW|G|27
4V69|1|AW|G|28
*
4V69|1|AW|C|42
4V69|1|AW|C|43
4V69|1|AW|G|44
4V69|1|AW|U|45
4V69|1|AW|G|46
4V69|1|AW|U|47
4V69|1|AW|C|48
4V69|1|AW|C|49
*
4V69|1|AW|G|65
4V69|1|AW|U|66

Current chains

Chain AW

P-site tRNA fMet (Unmodified bases except for Thymine 54)

Nearby chains

Chain AG

30S ribosomal protein S7

Chain B1

50S ribosomal protein L33