3D structure

PDB id
4V69 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ternary complex-bound E.coli 70S ribosome.
Experimental method
ELECTRON MICROSCOPY
Resolution
6.7 Å

Loop

Sequence
GGAAG*CGCG*CAG*CGUAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V69_008 not in the Motif Atlas
Homologous match to J4_9DFE_002
Geometric discrepancy: 0.1239
The information below is about J4_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_16174.1
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
5

Unit IDs

4V69|1|BB|G|297
4V69|1|BB|G|298
4V69|1|BB|A|299
4V69|1|BB|A|300
4V69|1|BB|G|301
*
4V69|1|BB|C|316
4V69|1|BB|G|317
4V69|1|BB|C|318
4V69|1|BB|G|319
*
4V69|1|BB|C|323
4V69|1|BB|A|324
4V69|1|BB|G|325
*
4V69|1|BB|C|337
4V69|1|BB|G|338
4V69|1|BB|U|339
4V69|1|BB|A|340
4V69|1|BB|C|341

Current chains

Chain BB
23S ribosomal RNA

Nearby chains

Chain BE
50S ribosomal protein L4
Chain BU
50S ribosomal protein L24

Coloring options:


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