J4_4V69_009

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V69_009 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.4319

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V69|1|BB|C|601
4V69|1|BB|A|602
4V69|1|BB|A|603
4V69|1|BB|G|604
*
4V69|1|BB|C|624
4V69|1|BB|G|625
4V69|1|BB|A|626
4V69|1|BB|A|627
4V69|1|BB|G|628
*
4V69|1|BB|C|635
4V69|1|BB|G|636
4V69|1|BB|A|637
4V69|1|BB|G|638
*
4V69|1|BB|C|650
4V69|1|BB|G|651
4V69|1|BB|U|652
4V69|1|BB|U|653
4V69|1|BB|A|654
4V69|1|BB|A|655
4V69|1|BB|G|656

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15