J4_4V69_011

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

4V69|1|BB|G|1341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V69_011 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.146

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V69|1|BB|G|1310
4V69|1|BB|G|1311
4V69|1|BB|U|1312
4V69|1|BB|U|1313
4V69|1|BB|C|1314
*
4V69|1|BB|G|1338
4V69|1|BB|G|1339
4V69|1|BB|U|1340
4V69|1|BB|G|1341
4V69|1|BB|A|1342
4V69|1|BB|G|1343
*
4V69|1|BB|C|1404
4V69|1|BB|U|1405
*
4V69|1|BB|A|1597
4V69|1|BB|A|1598
4V69|1|BB|U|1599
4V69|1|BB|C|1600
4V69|1|BB|G|1601
4V69|1|BB|U|1602
4V69|1|BB|A|1603
4V69|1|BB|C|1604

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BT

50S ribosomal protein L23