J4_4V69_015

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

4V69|1|BB|U|1971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V69_015 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1776

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

4V69|1|BB|C|1833
4V69|1|BB|U|1834
4V69|1|BB|G|1835
*
4V69|1|BB|C|1905
4V69|1|BB|G|1906
*
4V69|1|BB|C|1924
4V69|1|BB|C|1925
4V69|1|BB|U|1926
4V69|1|BB|A|1927
4V69|1|BB|A|1928
4V69|1|BB|G|1929
4V69|1|BB|G|1930
4V69|1|BB|U|1931
4V69|1|BB|A|1932
4V69|1|BB|G|1933
*
4V69|1|BB|C|1967
4V69|1|BB|G|1968
4V69|1|BB|A|1969
4V69|1|BB|A|1970
4V69|1|BB|U|1971
4V69|1|BB|G|1972

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AV

Transfer RNA; tRNA

Chain BC

50S ribosomal protein L2