J4_4V6D_002

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

4V6D|1|AA|C|183, 4V6D|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6D_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1686

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4V6D|1|AA|G|142
4V6D|1|AA|A|143
4V6D|1|AA|G|144
*
4V6D|1|AA|C|178
4V6D|1|AA|A|179
4V6D|1|AA|U|180
4V6D|1|AA|A|181
4V6D|1|AA|A|182
4V6D|1|AA|C|183
4V6D|1|AA|G|184
*
4V6D|1|AA|C|193
4V6D|1|AA|C|194
4V6D|1|AA|A|195
4V6D|1|AA|A|196
4V6D|1|AA|A|197
4V6D|1|AA|G|198
*
4V6D|1|AA|U|219
4V6D|1|AA|G|220
4V6D|1|AA|C|221

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20