J4_4V6D_004

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V6D|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6D_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0951

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V6D|1|BA|C|268
4V6D|1|BA|C|269
*
4V6D|1|BA|G|370
4V6D|1|BA|A|371
4V6D|1|BA|G|372
4V6D|1|BA|U|373
4V6D|1|BA|A|374
4V6D|1|BA|G|375
*
4V6D|1|BA|U|399
4V6D|1|BA|G|400
4V6D|1|BA|A|401
4V6D|1|BA|A|402
4V6D|1|BA|U|403
4V6D|1|BA|A|404
4V6D|1|BA|U|405
4V6D|1|BA|G|406
*
4V6D|1|BA|C|421
4V6D|1|BA|A|422
4V6D|1|BA|A|423
4V6D|1|BA|G|424

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain BX

50S ribosomal protein L28