3D structure

PDB id
4V6D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
Experimental method
X-RAY DIFFRACTION
Resolution
3.81 Å

Loop

Sequence
CC*GAGUAG*UGAAUAUG*CAAG
Length
20 nucleotides
Bulged bases
4V6D|1|BA|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V6D_004 not in the Motif Atlas
Homologous match to J4_5J7L_018
Geometric discrepancy: 0.0951
The information below is about J4_5J7L_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

4V6D|1|BA|C|268
4V6D|1|BA|C|269
*
4V6D|1|BA|G|370
4V6D|1|BA|A|371
4V6D|1|BA|G|372
4V6D|1|BA|U|373
4V6D|1|BA|A|374
4V6D|1|BA|G|375
*
4V6D|1|BA|U|399
4V6D|1|BA|G|400
4V6D|1|BA|A|401
4V6D|1|BA|A|402
4V6D|1|BA|U|403
4V6D|1|BA|A|404
4V6D|1|BA|U|405
4V6D|1|BA|G|406
*
4V6D|1|BA|C|421
4V6D|1|BA|A|422
4V6D|1|BA|A|423
4V6D|1|BA|G|424

Current chains

Chain BA
23S rRNA

Nearby chains

Chain BH
50S ribosomal protein L9
Chain BX
50S ribosomal protein L28

Coloring options:


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