J4_4V6E_014

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

4V6E|1|CA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6E_014 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.2518

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V6E|1|CA|G|115
4V6E|1|CA|A|116
4V6E|1|CA|G|117
4V6E|1|CA|U|118
4V6E|1|CA|A|119
4V6E|1|CA|A|120
4V6E|1|CA|U|121
4V6E|1|CA|G|122
*
4V6E|1|CA|U|239
4V6E|1|CA|G|240
*
4V6E|1|CA|C|286
4V6E|1|CA|U|287
4V6E|1|CA|A|288
4V6E|1|CA|G|289
*
4V6E|1|CA|C|311
4V6E|1|CA|C|312

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CQ

30S ribosomal protein S17