J4_4V6I_002

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CUUGUCUCAAA*UGACAAUAAAUAAC*GGAAUGAGUACAAUGUAAAUACCUUAACGAGGAACAAU*AUAG

Length

67 nucleotides

Bulged bases

4V6I|1|CA|A|475, 4V6I|1|CA|U|476, 4V6I|1|CA|A|478, 4V6I|1|CA|G|510, 4V6I|1|CA|A|511, 4V6I|1|CA|A|512, 4V6I|1|CA|U|513, 4V6I|1|CA|G|514, 4V6I|1|CA|A|515, 4V6I|1|CA|G|516, 4V6I|1|CA|U|517, 4V6I|1|CA|A|518, 4V6I|1|CA|C|519, 4V6I|1|CA|A|520, 4V6I|1|CA|A|521, 4V6I|1|CA|U|522, 4V6I|1|CA|G|523, 4V6I|1|CA|U|524, 4V6I|1|CA|A|525, 4V6I|1|CA|A|526, 4V6I|1|CA|A|527, 4V6I|1|CA|U|528, 4V6I|1|CA|A|529, 4V6I|1|CA|C|530, 4V6I|1|CA|C|531, 4V6I|1|CA|U|532, 4V6I|1|CA|U|533, 4V6I|1|CA|A|534, 4V6I|1|CA|A|535, 4V6I|1|CA|C|536, 4V6I|1|CA|G|537, 4V6I|1|CA|A|538, 4V6I|1|CA|G|539, 4V6I|1|CA|G|540, 4V6I|1|CA|A|541, 4V6I|1|CA|A|542, 4V6I|1|CA|C|543, 4V6I|1|CA|A|544, 4V6I|1|CA|A|545, 4V6I|1|CA|A|594

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|CA|C|31
4V6I|1|CA|U|32
4V6I|1|CA|U|33
4V6I|1|CA|G|34
4V6I|1|CA|U|35
4V6I|1|CA|C|36
4V6I|1|CA|U|37
4V6I|1|CA|C|38
4V6I|1|CA|A|39
4V6I|1|CA|A|40
4V6I|1|CA|A|41
*
4V6I|1|CA|U|466
4V6I|1|CA|G|467
4V6I|1|CA|A|468
4V6I|1|CA|C|469
4V6I|1|CA|A|470
4V6I|1|CA|A|471
4V6I|1|CA|U|472
4V6I|1|CA|A|473
4V6I|1|CA|A|474
4V6I|1|CA|A|475
4V6I|1|CA|U|476
4V6I|1|CA|A|477
4V6I|1|CA|A|478
4V6I|1|CA|C|479
*
4V6I|1|CA|G|509
4V6I|1|CA|G|510
4V6I|1|CA|A|511
4V6I|1|CA|A|512
4V6I|1|CA|U|513
4V6I|1|CA|G|514
4V6I|1|CA|A|515
4V6I|1|CA|G|516
4V6I|1|CA|U|517
4V6I|1|CA|A|518
4V6I|1|CA|C|519
4V6I|1|CA|A|520
4V6I|1|CA|A|521
4V6I|1|CA|U|522
4V6I|1|CA|G|523
4V6I|1|CA|U|524
4V6I|1|CA|A|525
4V6I|1|CA|A|526
4V6I|1|CA|A|527
4V6I|1|CA|U|528
4V6I|1|CA|A|529
4V6I|1|CA|C|530
4V6I|1|CA|C|531
4V6I|1|CA|U|532
4V6I|1|CA|U|533
4V6I|1|CA|A|534
4V6I|1|CA|A|535
4V6I|1|CA|C|536
4V6I|1|CA|G|537
4V6I|1|CA|A|538
4V6I|1|CA|G|539
4V6I|1|CA|G|540
4V6I|1|CA|A|541
4V6I|1|CA|A|542
4V6I|1|CA|C|543
4V6I|1|CA|A|544
4V6I|1|CA|A|545
4V6I|1|CA|U|546
*
4V6I|1|CA|A|592
4V6I|1|CA|U|593
4V6I|1|CA|A|594
4V6I|1|CA|G|595

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AC

40S ribosomal protein rpS9 (S4p)

Chain AD

40S ribosomal protein rpS4 (S4e)

Chain AL

40S ribosomal protein rpS23 (S12p)