J4_4V6I_003

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CAUUAAAUC*GCC*GUAAC*GG

Length

19 nucleotides

Bulged bases

4V6I|1|CA|A|359, 4V6I|1|CA|A|360

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|CA|C|99
4V6I|1|CA|A|100
4V6I|1|CA|U|101
4V6I|1|CA|U|102
4V6I|1|CA|A|103
4V6I|1|CA|A|104
4V6I|1|CA|A|105
4V6I|1|CA|U|106
4V6I|1|CA|C|107
*
4V6I|1|CA|G|307
4V6I|1|CA|C|308
4V6I|1|CA|C|309
*
4V6I|1|CA|G|357
4V6I|1|CA|U|358
4V6I|1|CA|A|359
4V6I|1|CA|A|360
4V6I|1|CA|C|361
*
4V6I|1|CA|G|383
4V6I|1|CA|G|384

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AL

40S ribosomal protein rpS23 (S12p)

Chain AP

40S ribosomal protein rpS11 (S17p)