J4_4V6I_006

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

4V6I|1|DA|A|1452, 4V6I|1|DA|A|1453, 4V6I|1|DA|U|1455, 4V6I|1|DA|A|1879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|C|1451
4V6I|1|DA|A|1452
4V6I|1|DA|A|1453
4V6I|1|DA|A|1454
4V6I|1|DA|U|1455
4V6I|1|DA|A|1456
4V6I|1|DA|U|1457
*
4V6I|1|DA|A|1475
4V6I|1|DA|G|1476
*
4V6I|1|DA|U|1877
4V6I|1|DA|G|1878
4V6I|1|DA|A|1879
4V6I|1|DA|U|1880
*
4V6I|1|DA|A|2352
4V6I|1|DA|G|2353

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BT

60S ribosomal protein rpL19 (L19e)

Chain BV

60S ribosomal protein rpL17 (L22p)

Chain Bg

60S ribosomal protein rpL31 (L31e)