J4_4V6I_007
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 4V6I|1|DA|U|1523, 4V6I|1|DA|G|1830, 4V6I|1|DA|U|1831
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6I|1|DA|G|1492
4V6I|1|DA|G|1493
4V6I|1|DA|U|1494
4V6I|1|DA|U|1495
4V6I|1|DA|C|1496
*
4V6I|1|DA|G|1520
4V6I|1|DA|G|1521
4V6I|1|DA|U|1522
4V6I|1|DA|U|1523
4V6I|1|DA|A|1524
4V6I|1|DA|G|1525
*
4V6I|1|DA|C|1614
4V6I|1|DA|C|1615
*
4V6I|1|DA|G|1829
4V6I|1|DA|G|1830
4V6I|1|DA|U|1831
4V6I|1|DA|C|1832
4V6I|1|DA|G|1833
4V6I|1|DA|U|1834
4V6I|1|DA|A|1835
4V6I|1|DA|C|1836
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BT
- 60S ribosomal protein rpL19 (L19e)
- Chain BX
- 60S ribosomal protein rpL25 (L23p)
- Chain Ba
- 60S ribosomal protein rpL27 (L27e)
- Chain Bc
- 60S ribosomal protein rpL35 (L29p)
- Chain Bl
- 60S ribosomal protein rpL37 (L37e)
- Chain Bn
- 60S ribosomal protein rpL38 (L38e)
- Chain Bo
- 60S ribosomal protein rpL39 (L39e)
- Chain Bp
- 60S ribosomal protein rpL40 (L40e)
- Chain DB
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: