J4_4V6I_011
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 4V6I|1|DA|U|2314
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V6I_011 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.1404
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V6I|1|DA|C|2192
4V6I|1|DA|U|2193
4V6I|1|DA|G|2194
*
4V6I|1|DA|C|2248
4V6I|1|DA|G|2249
*
4V6I|1|DA|C|2267
4V6I|1|DA|U|2268
4V6I|1|DA|U|2269
4V6I|1|DA|A|2270
4V6I|1|DA|A|2271
4V6I|1|DA|G|2272
4V6I|1|DA|G|2273
4V6I|1|DA|U|2274
4V6I|1|DA|A|2275
4V6I|1|DA|G|2276
*
4V6I|1|DA|U|2310
4V6I|1|DA|G|2311
4V6I|1|DA|A|2312
4V6I|1|DA|A|2313
4V6I|1|DA|U|2314
4V6I|1|DA|G|2315
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain Ac
- Unknown 40S ribosomal protein XS2
- Chain BB
- 60S ribosomal protein rpL2 (L2p)
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CB
- Transfer RNA; tRNA
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