J4_4V6K_002
3D structure
- PDB id
- 4V6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural insights into cognate vs. near-cognate discrimination during decoding.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.25 Å
Loop
- Sequence
- GGAAG*CGCG*CAG*CGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V6K_002 not in the Motif Atlas
- Homologous match to J4_5J7L_019
- Geometric discrepancy: 0.18
- The information below is about J4_5J7L_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V6K|1|AB|G|297
4V6K|1|AB|G|298
4V6K|1|AB|A|299
4V6K|1|AB|A|300
4V6K|1|AB|G|301
*
4V6K|1|AB|C|316
4V6K|1|AB|G|317
4V6K|1|AB|C|318
4V6K|1|AB|G|319
*
4V6K|1|AB|C|323
4V6K|1|AB|A|324
4V6K|1|AB|G|325
*
4V6K|1|AB|C|337
4V6K|1|AB|G|338
4V6K|1|AB|U|339
4V6K|1|AB|A|340
4V6K|1|AB|C|341
Current chains
- Chain AB
- ribosomal RNA 23S
Nearby chains
- Chain AF
- 50S ribosomal protein L4
- Chain AV
- 50S ribosomal protein L24
Coloring options: