J4_4V6K_003

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6K_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.3145

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V6K|1|AB|C|601
4V6K|1|AB|A|602
4V6K|1|AB|A|603
4V6K|1|AB|G|604
*
4V6K|1|AB|C|624
4V6K|1|AB|G|625
4V6K|1|AB|A|626
4V6K|1|AB|A|627
4V6K|1|AB|G|628
*
4V6K|1|AB|C|635
4V6K|1|AB|G|636
4V6K|1|AB|A|637
4V6K|1|AB|G|638
*
4V6K|1|AB|C|650
4V6K|1|AB|G|651
4V6K|1|AB|U|652
4V6K|1|AB|U|653
4V6K|1|AB|A|654
4V6K|1|AB|A|655
4V6K|1|AB|G|656

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AM

50S ribosomal protein L15

Chain Af

50S ribosomal protein L35