J4_4V6K_004

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

4V6K|1|AB|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6K_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1316

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V6K|1|AB|G|1310
4V6K|1|AB|G|1311
4V6K|1|AB|U|1312
4V6K|1|AB|U|1313
4V6K|1|AB|C|1314
*
4V6K|1|AB|G|1338
4V6K|1|AB|G|1339
4V6K|1|AB|U|1340
4V6K|1|AB|G|1341
4V6K|1|AB|A|1342
4V6K|1|AB|G|1343
*
4V6K|1|AB|C|1404
4V6K|1|AB|U|1405
*
4V6K|1|AB|A|1597
4V6K|1|AB|A|1598
4V6K|1|AB|U|1599
4V6K|1|AB|C|1600
4V6K|1|AB|G|1601
4V6K|1|AB|U|1602
4V6K|1|AB|A|1603
4V6K|1|AB|C|1604

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AU

50S ribosomal protein L23

Chain Ae

50S ribosomal protein L34