3D structure

PDB id
4V6K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural insights into cognate vs. near-cognate discrimination during decoding.
Experimental method
ELECTRON MICROSCOPY
Resolution
8.25 Å

Loop

Sequence
A(4SU)AG*CAG*CGU(7MG)(3AU)CC*GU
Length
16 nucleotides
Bulged bases
4V6K|1|BB|4SU|8, 4V6K|1|BB|3AU|47, 4V6K|1|BB|C|48
QA status
Modified nucleotides: 4SU, 7MG, 3AU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V6K_019 not in the Motif Atlas
Homologous match to J4_5HR6_001
Geometric discrepancy: 0.4046
The information below is about J4_5HR6_001
Detailed Annotation
tRNA junction
Broad Annotation
No text annotation
Motif group
J4_70449.29
Basepair signature
cWW-F-cWW-cWW-cHS-F-cWW-cWW
Number of instances in this motif group
54

Unit IDs

4V6K|1|BB|A|7
4V6K|1|BB|4SU|8
4V6K|1|BB|A|9
4V6K|1|BB|G|10
*
4V6K|1|BB|C|25
4V6K|1|BB|A|26
4V6K|1|BB|G|27
*
4V6K|1|BB|C|43
4V6K|1|BB|G|44
4V6K|1|BB|U|45
4V6K|1|BB|7MG|46
4V6K|1|BB|3AU|47
4V6K|1|BB|C|48
4V6K|1|BB|C|49
*
4V6K|1|BB|G|65
4V6K|1|BB|U|66

Current chains

Chain BB
A/T-site tRNA Phe

Nearby chains

Chain AB
Large subunit ribosomal RNA; LSU rRNA
Chain BC
Elongation factor Tu 2

Coloring options:


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