J4_4V6K_019
3D structure
- PDB id
- 4V6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural insights into cognate vs. near-cognate discrimination during decoding.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.25 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(7MG)(3AU)CC*GU
- Length
- 16 nucleotides
- Bulged bases
- 4V6K|1|BB|4SU|8, 4V6K|1|BB|3AU|47, 4V6K|1|BB|C|48
- QA status
- Modified nucleotides: 4SU, 7MG, 3AU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V6K_019 not in the Motif Atlas
- Homologous match to J4_5HR6_001
- Geometric discrepancy: 0.4046
- The information below is about J4_5HR6_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
4V6K|1|BB|A|7
4V6K|1|BB|4SU|8
4V6K|1|BB|A|9
4V6K|1|BB|G|10
*
4V6K|1|BB|C|25
4V6K|1|BB|A|26
4V6K|1|BB|G|27
*
4V6K|1|BB|C|43
4V6K|1|BB|G|44
4V6K|1|BB|U|45
4V6K|1|BB|7MG|46
4V6K|1|BB|3AU|47
4V6K|1|BB|C|48
4V6K|1|BB|C|49
*
4V6K|1|BB|G|65
4V6K|1|BB|U|66
Current chains
- Chain BB
- A/T-site tRNA Phe
Nearby chains
- Chain AB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BC
- Elongation factor Tu 2
Coloring options: