J4_4V6L_008

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6L_008 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.3859

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V6L|1|BB|C|601
4V6L|1|BB|A|602
4V6L|1|BB|A|603
4V6L|1|BB|G|604
*
4V6L|1|BB|C|624
4V6L|1|BB|G|625
4V6L|1|BB|A|626
4V6L|1|BB|A|627
4V6L|1|BB|G|628
*
4V6L|1|BB|C|635
4V6L|1|BB|G|636
4V6L|1|BB|A|637
4V6L|1|BB|G|638
*
4V6L|1|BB|C|650
4V6L|1|BB|G|651
4V6L|1|BB|U|652
4V6L|1|BB|U|653
4V6L|1|BB|A|654
4V6L|1|BB|A|655
4V6L|1|BB|G|656

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BM

50S ribosomal protein L15

Chain Bf

50S ribosomal protein L35