J4_4V6L_009

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

AUAAGUAACGAUAAAG*CUCG*CGCUU*AGUGAAAUU

Length

34 nucleotides

Bulged bases

4V6L|1|BB|G|1271, 4V6L|1|BB|U|1273, 4V6L|1|BB|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6L|1|BB|A|1262
4V6L|1|BB|U|1263
4V6L|1|BB|A|1264
4V6L|1|BB|A|1265
4V6L|1|BB|G|1266
4V6L|1|BB|U|1267
4V6L|1|BB|A|1268
4V6L|1|BB|A|1269
4V6L|1|BB|C|1270
4V6L|1|BB|G|1271
4V6L|1|BB|A|1272
4V6L|1|BB|U|1273
4V6L|1|BB|A|1274
4V6L|1|BB|A|1275
4V6L|1|BB|A|1276
4V6L|1|BB|G|1277
*
4V6L|1|BB|C|1293
4V6L|1|BB|U|1294
4V6L|1|BB|C|1295
4V6L|1|BB|G|1296
*
4V6L|1|BB|C|1644
4V6L|1|BB|G|1645
4V6L|1|BB|C|1646
4V6L|1|BB|U|1647
4V6L|1|BB|U|1648
*
4V6L|1|BB|A|2009
4V6L|1|BB|G|2010
4V6L|1|BB|U|2011
4V6L|1|BB|G|2012
4V6L|1|BB|A|2013
4V6L|1|BB|A|2014
4V6L|1|BB|A|2015
4V6L|1|BB|U|2016
4V6L|1|BB|U|2017

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BO

50S ribosomal protein L17

Chain BR

50S ribosomal protein L20

Chain BT

50S ribosomal protein L22

Chain Bc

50S ribosomal protein L32