J4_4V6L_010
3D structure
- PDB id
- 4V6L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural insights into cognate vs. near-cognate discrimination during decoding.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.2 Å
Loop
- Sequence
- GGUUC*GGUGAG*CU*AAUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 4V6L|1|BB|G|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V6L_010 not in the Motif Atlas
- Homologous match to J4_5J7L_022
- Geometric discrepancy: 0.1851
- The information below is about J4_5J7L_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V6L|1|BB|G|1310
4V6L|1|BB|G|1311
4V6L|1|BB|U|1312
4V6L|1|BB|U|1313
4V6L|1|BB|C|1314
*
4V6L|1|BB|G|1338
4V6L|1|BB|G|1339
4V6L|1|BB|U|1340
4V6L|1|BB|G|1341
4V6L|1|BB|A|1342
4V6L|1|BB|G|1343
*
4V6L|1|BB|C|1404
4V6L|1|BB|U|1405
*
4V6L|1|BB|A|1597
4V6L|1|BB|A|1598
4V6L|1|BB|U|1599
4V6L|1|BB|C|1600
4V6L|1|BB|G|1601
4V6L|1|BB|U|1602
4V6L|1|BB|A|1603
4V6L|1|BB|C|1604
Current chains
- Chain BB
- 50S ribosomal RNA 23S
Nearby chains
- Chain BU
- 50S ribosomal protein L23
- Chain Be
- 50S ribosomal protein L34
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