J4_4V6M_004
3D structure
- PDB id
- 4V6M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ribosome-SecYE complex in the membrane environment
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.1 Å
Loop
- Sequence
- GUAG*CAC*GGGGUCG*UC
- Length
- 16 nucleotides
- Bulged bases
- 4V6M|1|AV|U|8, 4V6M|1|AV|U|48, 4V6M|1|AV|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V6M_004 not in the Motif Atlas
- Homologous match to J4_8VU0_001
- Geometric discrepancy: 0.2676
- The information below is about J4_8VU0_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.27
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 53
Unit IDs
4V6M|1|AV|G|7
4V6M|1|AV|U|8
4V6M|1|AV|A|9
4V6M|1|AV|G|10
*
4V6M|1|AV|C|26
4V6M|1|AV|A|27
4V6M|1|AV|C|28
*
4V6M|1|AV|G|44
4V6M|1|AV|G|45
4V6M|1|AV|G|46
4V6M|1|AV|G|47
4V6M|1|AV|U|48
4V6M|1|AV|C|49
4V6M|1|AV|G|50
*
4V6M|1|AV|U|66
4V6M|1|AV|C|67
Current chains
- Chain AV
- FtsQ nascent chain
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AM
- 30S ribosomal protein S13
- Chain B8
- Large subunit ribosomal RNA; LSU rRNA
- Chain BM
- 50S ribosomal protein L16
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