J4_4V6M_007

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

4V6M|1|B8|U|653, 4V6M|1|B8|A|654

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6M_007 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.4598

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V6M|1|B8|C|601
4V6M|1|B8|A|602
4V6M|1|B8|A|603
4V6M|1|B8|G|604
*
4V6M|1|B8|C|624
4V6M|1|B8|G|625
4V6M|1|B8|A|626
4V6M|1|B8|A|627
4V6M|1|B8|G|628
*
4V6M|1|B8|C|635
4V6M|1|B8|G|636
4V6M|1|B8|A|637
4V6M|1|B8|G|638
*
4V6M|1|B8|C|650
4V6M|1|B8|G|651
4V6M|1|B8|U|652
4V6M|1|B8|U|653
4V6M|1|B8|A|654
4V6M|1|B8|A|655
4V6M|1|B8|G|656

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15