J4_4V6N_002

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GGAAGCG*CGCGCG*CAG*CGUAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6N|1|AB|G|297
4V6N|1|AB|G|298
4V6N|1|AB|A|299
4V6N|1|AB|A|300
4V6N|1|AB|G|301
4V6N|1|AB|C|302
4V6N|1|AB|G|303
*
4V6N|1|AB|C|314
4V6N|1|AB|G|315
4V6N|1|AB|C|316
4V6N|1|AB|G|317
4V6N|1|AB|C|318
4V6N|1|AB|G|319
*
4V6N|1|AB|C|323
4V6N|1|AB|A|324
4V6N|1|AB|G|325
*
4V6N|1|AB|C|337
4V6N|1|AB|G|338
4V6N|1|AB|U|339
4V6N|1|AB|A|340
4V6N|1|AB|C|341

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AW

50S ribosomal protein L24