J4_4V6N_003

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

4V6N|1|AB|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6N_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.5087

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V6N|1|AB|C|601
4V6N|1|AB|A|602
4V6N|1|AB|A|603
4V6N|1|AB|G|604
*
4V6N|1|AB|C|624
4V6N|1|AB|G|625
4V6N|1|AB|A|626
4V6N|1|AB|A|627
4V6N|1|AB|G|628
*
4V6N|1|AB|C|635
4V6N|1|AB|G|636
4V6N|1|AB|A|637
4V6N|1|AB|G|638
*
4V6N|1|AB|C|650
4V6N|1|AB|G|651
4V6N|1|AB|U|652
4V6N|1|AB|U|653
4V6N|1|AB|A|654
4V6N|1|AB|A|655
4V6N|1|AB|G|656

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain A6

50S ribosomal protein L35

Chain AF

50S ribosomal protein L4

Chain AN

50S ribosomal protein L15