J4_4V6N_010
3D structure
- PDB id
- 4V6N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- UUUA*UUUGACUG(OMG)GGCGGUCU*AG*CGGAUAAAA
- Length
- 32 nucleotides
- Bulged bases
- 4V6N|1|AB|U|2076, 4V6N|1|AB|G|2250, 4V6N|1|AB|G|2428, 4V6N|1|AB|G|2429, 4V6N|1|AB|A|2430, 4V6N|1|AB|U|2431, 4V6N|1|AB|A|2434
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6N|1|AB|U|2074
4V6N|1|AB|U|2075
4V6N|1|AB|U|2076
4V6N|1|AB|A|2077
*
4V6N|1|AB|U|2243
4V6N|1|AB|U|2244
4V6N|1|AB|U|2245
4V6N|1|AB|G|2246
4V6N|1|AB|A|2247
4V6N|1|AB|C|2248
4V6N|1|AB|U|2249
4V6N|1|AB|G|2250
4V6N|1|AB|OMG|2251
4V6N|1|AB|G|2252
4V6N|1|AB|G|2253
4V6N|1|AB|C|2254
4V6N|1|AB|G|2255
4V6N|1|AB|G|2256
4V6N|1|AB|U|2257
4V6N|1|AB|C|2258
4V6N|1|AB|U|2259
*
4V6N|1|AB|A|2281
4V6N|1|AB|G|2282
*
4V6N|1|AB|C|2427
4V6N|1|AB|G|2428
4V6N|1|AB|G|2429
4V6N|1|AB|A|2430
4V6N|1|AB|U|2431
4V6N|1|AB|A|2432
4V6N|1|AB|A|2433
4V6N|1|AB|A|2434
4V6N|1|AB|A|2435
Current chains
- Chain AB
- 23S ribosomal RNA
Nearby chains
- Chain A4
- 50S ribosomal protein L33
- Chain A6
- 50S ribosomal protein L35
- Chain AD
- 50S ribosomal protein L2
- Chain AN
- 50S ribosomal protein L15
- Chain AO
- 50S ribosomal protein L16
- Chain AY
- 50S ribosomal protein L27
- Chain AZ
- 50S ribosomal protein L28
- Chain BD
- Transfer RNA; tRNA
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