J4_4V6N_016
3D structure
- PDB id
- 4V6N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4V6N|1|BD|4SU|8, 4V6N|1|BD|U|48, 4V6N|1|BD|C|49
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V6N_016 not in the Motif Atlas
- Homologous match to J4_6UGG_002
- Geometric discrepancy: 0.3491
- The information below is about J4_6UGG_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
4V6N|1|BD|G|7
4V6N|1|BD|4SU|8
4V6N|1|BD|G|9
4V6N|1|BD|G|10
*
4V6N|1|BD|C|26
4V6N|1|BD|G|27
4V6N|1|BD|U|28
*
4V6N|1|BD|A|44
4V6N|1|BD|A|45
4V6N|1|BD|G|46
4V6N|1|BD|A|47
4V6N|1|BD|U|48
4V6N|1|BD|C|49
4V6N|1|BD|G|50
*
4V6N|1|BD|C|66
4V6N|1|BD|C|67
Current chains
- Chain BD
- P site tRNA
Nearby chains
- Chain AB
- Large subunit ribosomal RNA; LSU rRNA
- Chain AO
- 50S ribosomal protein L16
- Chain BB
- Transfer RNA; tRNA
- Chain BP
- 30S ribosomal protein S13
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