J4_4V6N_019

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

AACUG*CACAG*UGACG*CGUAAU

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6N|1|AB|A|1772
4V6N|1|AB|A|1773
4V6N|1|AB|C|1774
4V6N|1|AB|U|1775
4V6N|1|AB|G|1776
*
4V6N|1|AB|C|1788
4V6N|1|AB|A|1789
4V6N|1|AB|C|1790
4V6N|1|AB|A|1791
4V6N|1|AB|G|1792
*
4V6N|1|AB|U|1827
4V6N|1|AB|G|1828
4V6N|1|AB|A|1829
4V6N|1|AB|C|1830
4V6N|1|AB|G|1831
*
4V6N|1|AB|C|1974
4V6N|1|AB|G|1975
4V6N|1|AB|U|1976
4V6N|1|AB|A|1977
4V6N|1|AB|A|1978
4V6N|1|AB|U|1979

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA