J4_4V6O_005

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

G(4SU)GG*CGU*AAGAUCG*CC

Length

16 nucleotides

Bulged bases

4V6O|1|AD|4SU|8, 4V6O|1|AD|U|48, 4V6O|1|AD|C|49

QA status

Modified nucleotides: 4SU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6O_005 not in the Motif Atlas

Homologous match to J4_7K98_001

Geometric discrepancy: 0.3888

The information below is about J4_7K98_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

4V6O|1|AD|G|7
4V6O|1|AD|4SU|8
4V6O|1|AD|G|9
4V6O|1|AD|G|10
*
4V6O|1|AD|C|26
4V6O|1|AD|G|27
4V6O|1|AD|U|28
*
4V6O|1|AD|A|44
4V6O|1|AD|A|45
4V6O|1|AD|G|46
4V6O|1|AD|A|47
4V6O|1|AD|U|48
4V6O|1|AD|C|49
4V6O|1|AD|G|50
*
4V6O|1|AD|C|66
4V6O|1|AD|C|67

Current chains

Chain AD

P site tRNA

Nearby chains

Chain AB

Transfer RNA; tRNA

Chain AP

30S ribosomal protein S13

Chain BB

Large subunit ribosomal RNA; LSU rRNA