J4_4V6O_008

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

4V6O|1|BB|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6O_008 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.5017

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V6O|1|BB|C|601
4V6O|1|BB|A|602
4V6O|1|BB|A|603
4V6O|1|BB|G|604
*
4V6O|1|BB|C|624
4V6O|1|BB|G|625
4V6O|1|BB|A|626
4V6O|1|BB|A|627
4V6O|1|BB|G|628
*
4V6O|1|BB|C|635
4V6O|1|BB|G|636
4V6O|1|BB|A|637
4V6O|1|BB|G|638
*
4V6O|1|BB|C|650
4V6O|1|BB|G|651
4V6O|1|BB|U|652
4V6O|1|BB|U|653
4V6O|1|BB|A|654
4V6O|1|BB|A|655
4V6O|1|BB|G|656

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B6

50S ribosomal protein L35

Chain BF

50S ribosomal protein L4

Chain BN

50S ribosomal protein L15