J4_4V6O_017

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GAGUAAUGU*AUG*CUAG*CC

Length

18 nucleotides

Bulged bases

4V6O|1|AA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6O|1|AA|G|115
4V6O|1|AA|A|116
4V6O|1|AA|G|117
4V6O|1|AA|U|118
4V6O|1|AA|A|119
4V6O|1|AA|A|120
4V6O|1|AA|U|121
4V6O|1|AA|G|122
4V6O|1|AA|U|123
*
4V6O|1|AA|A|238
4V6O|1|AA|U|239
4V6O|1|AA|G|240
*
4V6O|1|AA|C|286
4V6O|1|AA|U|287
4V6O|1|AA|A|288
4V6O|1|AA|G|289
*
4V6O|1|AA|C|311
4V6O|1|AA|C|312

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AS

30S ribosomal protein S16

Chain AT

30S ribosomal protein S17