J4_4V6Q_005
3D structure
- PDB id
- 4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 11.5 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4V6Q|1|AD|4SU|8, 4V6Q|1|AD|U|48, 4V6Q|1|AD|C|49
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V6Q_005 not in the Motif Atlas
- Homologous match to J4_7UZ0_001
- Geometric discrepancy: 0.3253
- The information below is about J4_7UZ0_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
4V6Q|1|AD|G|7
4V6Q|1|AD|4SU|8
4V6Q|1|AD|G|9
4V6Q|1|AD|G|10
*
4V6Q|1|AD|C|26
4V6Q|1|AD|G|27
4V6Q|1|AD|U|28
*
4V6Q|1|AD|A|44
4V6Q|1|AD|A|45
4V6Q|1|AD|G|46
4V6Q|1|AD|A|47
4V6Q|1|AD|U|48
4V6Q|1|AD|C|49
4V6Q|1|AD|G|50
*
4V6Q|1|AD|C|66
4V6Q|1|AD|C|67
Current chains
- Chain AD
- P site tRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AP
- 30S ribosomal protein S13
- Chain B4
- 50S ribosomal protein L33
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
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