J4_4V6Q_007

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GGAAGC*GCGCG*CAG*CGUAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6Q|1|BB|G|297
4V6Q|1|BB|G|298
4V6Q|1|BB|A|299
4V6Q|1|BB|A|300
4V6Q|1|BB|G|301
4V6Q|1|BB|C|302
*
4V6Q|1|BB|G|315
4V6Q|1|BB|C|316
4V6Q|1|BB|G|317
4V6Q|1|BB|C|318
4V6Q|1|BB|G|319
*
4V6Q|1|BB|C|323
4V6Q|1|BB|A|324
4V6Q|1|BB|G|325
*
4V6Q|1|BB|C|337
4V6Q|1|BB|G|338
4V6Q|1|BB|U|339
4V6Q|1|BB|A|340
4V6Q|1|BB|C|341

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BW

50S ribosomal protein L24